#!/bin/bash LIB=./lib FILE=$1 TRS=/tmp/autonon_`basename $FILE`.trs xsltproc $LIB/xtc2tpdb.xsl $FILE > ./$TRS java -cp jambox.jar:$LIB/automaton.jar:$LIB/glpk.jar -Djava.library.path=$LIB/ -Xmx16G jam.Main lib=$LIB/ ./$TRS